| #51 |
More sophisticated error handling for writing to file
|
new
|
apdavison
|
defect
|
minor
|
0.8.0
|
| #155 |
When using `Projection.set/getWeights()` with arrays, the case of multiple connections between source and target is not consistently handled or tested
|
new
|
|
defect
|
major
|
0.8.0
|
| #165 |
Temporary files are not closed correctly by Recorder class
|
new
|
apdavison
|
defect
|
minor
|
0.8.0
|
| #170 |
TsodyksMarkramMechanism in neuron fails for specific time constant values
|
assigned
|
apdavison
|
defect
|
minor
|
0.8.0
|
| #172 |
TsodyksMarkram Synapse - uses nest tsodyks_synapse but not tau_psc
|
assigned
|
apdavison
|
defect
|
major
|
0.8.0
|
| #174 |
lost current sources due to NEURON Population.inject reference counting
|
new
|
apdavison
|
defect
|
minor
|
0.8.0
|
| #187 |
Where functions/methods take numerical values as arguments, ensure the docstring states the units
|
new
|
|
defect
|
minor
|
0.8.0
|
| #190 |
reset simulator.state.default_recording_precision
|
new
|
apdavison
|
defect
|
minor
|
0.8.0
|
| #192 |
Recording issue with multiple run() calls in NEST and to_file=True
|
new
|
|
defect
|
major
|
0.8.0
|
| #196 |
Error when using PyNN on Windows
|
new
|
apdavison
|
defect
|
major
|
0.8.0
|
| #200 |
setup(); run(0) advances time by 1 timestep
|
new
|
apdavison
|
defect
|
trivial
|
0.8.0
|
| #201 |
Not all tests are correctly skipped when dependencies are not available.
|
new
|
apdavison
|
defect
|
minor
|
0.8.0
|
| #223 |
Build Documentation for NEST and NEURON with music support
|
new
|
emuller
|
defect
|
major
|
0.8.0
|
| #227 |
Port the bug fixes in 0.7.3 to trunk
|
new
|
|
defect
|
major
|
0.8.0
|
| #230 |
NEST does not accept multi-cell spike source arrays
|
new
|
apdavison
|
defect
|
minor
|
0.8.0
|
| #232 |
error message while running PyNN examples with NEURON support
|
assigned
|
apdavison
|
defect
|
minor
|
0.8.0
|
| #233 |
NoisyCurrentSource not found in pyNN.neuron
|
new
|
apdavison
|
defect
|
major
|
0.8.0
|
| #234 |
end() statement giving error in pyNN.neuron
|
assigned
|
apdavison
|
defect
|
minor
|
0.8.0
|
| #237 |
FixedNumberPreConnector doesn't create the right connectivity
|
new
|
|
defect
|
major
|
0.8.0
|
| #239 |
pyNN-Brian interface problems
|
new
|
--
|
defect
|
major
|
0.8.0
|
| #243 |
In NEST tests, recording_devices accumulate from previous runs causing failures
|
assigned
|
apdavison
|
defect
|
major
|
0.8.0
|
| #250 |
`FixedNumberPreConnector` does not work with `parallel_safe=True`
|
assigned
|
apdavison
|
defect
|
major
|
|
| #24 |
Implement user-specified output formats for spikes, etc
|
new
|
somebody
|
enhancement
|
minor
|
0.8.0
|
| #35 |
Access to neuron variables via properties of the ID class
|
assigned
|
apdavison
|
enhancement
|
minor
|
0.8.0
|
| #62 |
Draw dynamic synapses parameters from RNG Distributions
|
new
|
pierre
|
enhancement
|
major
|
0.8.0
|
| #65 |
Add a `get_simulator()` function
|
assigned
|
apdavison
|
enhancement
|
minor
|
0.8.0
|
| #69 |
Change `set(cells, params, val)` to `set(cells, **parameters)`
|
new
|
apdavison
|
enhancement
|
minor
|
0.8.0
|
| #113 |
Add `Projection.record_weights()` or something similar
|
assigned
|
apdavison
|
enhancement
|
major
|
0.8.0
|
| #114 |
`dummy` or `test` module to check argument types, etc in code before starting a time-consuming run
|
assigned
|
apdavison
|
enhancement
|
minor
|
0.8.0
|
| #132 |
The selection of dynamic synapse models that is done in `Projection.__init__()` would be better done in the `SynapseDynamics` class
|
new
|
|
enhancement
|
minor
|
0.8.0
|
| #133 |
Add functions `run_for()` and `run_until()`, with `run()` an alias for `run_for()`
|
new
|
|
enhancement
|
minor
|
0.8.0
|
| #137 |
Reimplement connectors in terms of arrays
|
new
|
apdavison
|
enhancement
|
major
|
0.8.0
|
| #138 |
All issues of which connections are local should be dealt with within ConnectionManager, not in the Connectors
|
new
|
apdavison
|
enhancement
|
major
|
0.8.0
|
| #139 |
Add a FromArrayConnector class
|
new
|
apdavison
|
enhancement
|
minor
|
0.8.0
|
| #142 |
When creating a Projection it is not clear how to define if it is a excitatory or inhibitory synapse (in the case of conductance based synapses)
|
new
|
|
enhancement
|
minor
|
0.8.0
|
| #153 |
A way to reset the list of things to record
|
assigned
|
apdavison
|
enhancement
|
major
|
0.8.0
|
| #154 |
Implement `Population.record_gsyn()` method and `record_gsyn()` function in the `pcsim` module
|
new
|
apdavison
|
enhancement
|
major
|
0.8.0
|
| #161 |
Rethink the connectors as convergent_connect() and problems with set/getWeight
|
new
|
--
|
enhancement
|
major
|
0.8.0
|
| #175 |
When changing the resting membrane potential parameter, also change the default initial value
|
new
|
apdavison
|
enhancement
|
minor
|
0.8.0
|
| #182 |
More comprehensive unit conversion for recorded variables
|
new
|
apdavison
|
enhancement
|
major
|
0.8.0
|
| #183 |
Remove 'gsyn' as a valid recordable (replace with 'gsyn_e' and 'gsyn_i')
|
new
|
apdavison
|
enhancement
|
major
|
0.8.0
|
| #189 |
printSpikes - number of decimal places
|
new
|
apdavison
|
enhancement
|
major
|
0.8.0
|
| #204 |
PyNN.music.Port[Pipe] for exposing e.g. Population 'spikes' or 'v' to music programs external to PyNN
|
new
|
apdavison
|
enhancement
|
major
|
0.8.0
|
| #205 |
PyNN.proxy/model-container backend
|
new
|
apdavison
|
enhancement
|
major
|
0.8.0
|
| #212 |
Export PyNN script as NEST sli script
|
new
|
apdavison
|
enhancement
|
minor
|
0.8.0
|
| #224 |
Efficient Poisson Sources ?
|
new
|
pierre
|
enhancement
|
minor
|
0.8.0
|
| #228 |
Add an "inherits_docstring" decorator
|
new
|
apdavison
|
enhancement
|
minor
|
0.8.0
|
| #229 |
Implement `FromGeneratorConnector`
|
new
|
|
enhancement
|
minor
|
0.8.0
|
| #248 |
Multiple synaptic time constants
|
new
|
--
|
enhancement
|
major
|
0.8.0
|
| #249 |
min_delay should be calculated automatically if not set
|
assigned
|
apdavison
|
enhancement
|
major
|
0.8.0
|
| #254 |
Per-timestep user-defined operations
|
new
|
--
|
enhancement
|
major
|
0.8.0
|
| #1 |
Combine print() and print_v() into a single write() that takes what-to-print as an argument
|
assigned
|
apdavison
|
task
|
minor
|
0.8.0
|
| #2 |
Separate standard models into a membrane part and a synapse part
|
new
|
somebody
|
task
|
major
|
0.8.0
|
| #4 |
Any int or float cell or connection parameter should be replaceable by a RandomDistribution object, or by a list/array of ints/floats
|
new
|
Pierre
|
task
|
major
|
0.8.0
|
| #5 |
More sophisticated parameter handling
|
new
|
somebody
|
task
|
major
|
0.8.0
|
| #8 |
Create NEURON/Brian versions of the IF_cond_exp_gsfa_grr model
|
assigned
|
apdavison
|
task
|
minor
|
0.8.0
|
| #9 |
Add an Izhikevich standard model
|
new
|
somebody
|
task
|
minor
|
0.8.0
|
| #10 |
Improve NEURON implementation of IF_curr_alpha, etc
|
new
|
apdavison
|
task
|
minor
|
0.8.0
|
| #20 |
Performance benchmarks
|
new
|
somebody
|
task
|
minor
|
0.8.0
|
| #54 |
Thoroughly test with native models
|
new
|
apdavison
|
task
|
minor
|
0.8.0
|
| #67 |
Move the `max_delay` argument of `setup()` into `extra_params`, since not all simulators use it
|
new
|
apdavison
|
task
|
minor
|
0.8.0
|
| #73 |
Compatible output should save times in voltage files
|
new
|
apdavison
|
task
|
minor
|
0.8.0
|
| #125 |
Update NMODL files in src/hoc to be thread-safe, where possible
|
assigned
|
apdavison
|
task
|
major
|
0.8.0
|
| #181 |
Update docstrings
|
new
|
|
task
|
major
|
0.8.0
|