|
|
|
@947
|
[947]
|
2 years |
apdavison |
Getting neuron models described in the 9ML abstraction layer working with …
|
|
|
|
@946
|
[946]
|
2 years |
pierre |
Some work in the Nemo Backend
|
|
|
|
@945
|
[945]
|
2 years |
pierre |
stupid mistake…
|
|
|
|
@944
|
[944]
|
2 years |
pierre |
Speed up the initialization of Projections using Tsodyks Markram synapses …
|
|
|
|
@943
|
[943]
|
2 years |
apdavison |
Removed the load_mechanisms() function from neuron.simulator, since it …
|
|
|
|
@942
|
[942]
|
2 years |
apdavison |
Added the beginnings of support for NineML abstraction layer …
|
|
|
|
@941
|
[941]
|
2 years |
pierre |
Add a sample method to the Assembly object, and add the possibility, for …
|
|
|
|
@940
|
[940]
|
2 years |
apdavison |
Values are now written to text files with their full precision (difference …
|
|
|
|
@939
|
[939]
|
2 years |
pierre |
update in the NeMo? module, before trying it on a GPU. SpikeSourcePlayer? …
|
|
|
|
@938
|
[938]
|
2 years |
pierre |
Nemo improvements, fixes, bugs
|
|
|
|
@937
|
[937]
|
2 years |
pierre |
Nemo improvements, fixes, bugs
|
|
|
|
@936
|
[936]
|
2 years |
pierre |
Small fixes in the Nemo backend, need a *not available yet* version of the …
|
|
|
|
@935
|
[935]
|
2 years |
pierre |
Some fixes in the Nemo module, taking into account updates in the API, not …
|
|
|
|
@934
|
[934]
|
2 years |
apdavison |
Stupid oversight in the previous commit. That'll teach me to run all the …
|
|
|
|
@933
|
[933]
|
2 years |
apdavison |
Currently, any file opening errors encountered when creating a PyNN File …
|
|
|
|
@932
|
[932]
|
2 years |
pierre |
Add a backend for a new simulator, Nemo, based on GPU, and supposed to be …
|
|
|
|
@931
|
[931]
|
2 years |
pierre |
Fix a bug in the meanSpikeCount() values for NEST.... silent cells were …
|
|
|
|
@929
|
[929]
|
2 years |
apdavison |
Fixed source package to include templates. Nudged version number to 0.7.0
|
|
|
|
@928
|
[928]
|
2 years |
pierre |
A all() method is missing for the Assemblies
|
|
|
|
@927
|
[927]
|
2 years |
apdavison |
Documentation updates and minor fixes
|
|
|
|
@926
|
[926]
|
2 years |
apdavison |
Where Population.initial_values contains arrays, these arrays now …
|
|
|
|
@925
|
[925]
|
2 years |
apdavison |
Fix for ticket:186 (setup() fails in pyNN.nest if MPI is not installed).
|
|
|
|
@924
|
[924]
|
2 years |
apdavison |
Reverted changes to space module in previous commit. Added …
|
|
|
|
@923
|
[923]
|
2 years |
pierre |
Fix some bugs in the space modules for 3D structures, and I think a minor …
|
|
|
|
@922
|
[922]
|
2 years |
apdavison |
Fixes for bugs identified when running doctest on highlevelapi.txt. Not …
|
|
|
|
@921
|
[921]
|
2 years |
apdavison |
Documentation updates.
|
|
|
|
@920
|
[920]
|
2 years |
emuller |
Allow override of default_maxstep for NEURON backend as setup paramter. …
|
|
|
|
@919
|
[919]
|
2 years |
apdavison |
Fixed a bug in pyNN.neuron's convergent_connect(). Added …
|
|
|
|
@918
|
[918]
|
2 years |
emuller |
iaf_sfa_relref example: no need to import nest
|
|
|
|
@917
|
[917]
|
2 years |
apdavison |
More pcsim fixes
|
|
|
|
@916
|
[916]
|
2 years |
apdavison |
Added a property "conductance_based" to BasePopulation and Assembly. …
|
|
|
|
@915
|
[915]
|
2 years |
apdavison |
Discovered that when using NEST with mpi4py, you must import nest first …
|
|
|
|
@914
|
[914]
|
2 years |
apdavison |
Metadata now contains both first_id/last_id and first_index/last_index …
|
|
|
|
@913
|
[913]
|
2 years |
apdavison |
Added a new setup() option for pyNN.nest: recording_precision. By …
|
|
|
|
@912
|
[912]
|
2 years |
pierre |
Add rset and all methods to an Assembly object, and fix some bugs in …
|
|
|
|
@911
|
[911]
|
2 years |
pierre |
Response to update 905: If indices are stored, then to be consistant the …
|
|
|
|
@910
|
[910]
|
2 years |
emuller |
iaf_cond_exp_gsfa_grr example network using inh_gamma renamed as such. It …
|
|
|
|
@909
|
[909]
|
2 years |
emuller |
NEST and NEURON backends working for iaf_cond_exp_gsfa_grr examples
|
|
|
|
@908
|
[908]
|
2 years |
emuller |
Fixed error message for Projection with invalid target
|
|
|
|
@907
|
[907]
|
2 years |
apdavison |
Docstring updates
|
|
|
|
@906
|
[906]
|
2 years |
apdavison |
Partial reversion of r905: with compatible_output=True, entries should …
|
|
|
|
@905
|
[905]
|
2 years |
pierre |
Bugs when written data are empty. In addition, add a wuick fix to allow …
|
|
|
|
@904
|
[904]
|
2 years |
pierre |
Fix minors bugs. meanSpikeCount should return 0 if no spikes are found, …
|
|
|
|
@903
|
[903]
|
2 years |
pierre |
again, other bug found for recording with the nest module when launched …
|
|
|
|
@902
|
[902]
|
2 years |
pierre |
Fix some bugs in the nest module with MPI. Not sure, however, that the new …
|
|
|
|
@901
|
[901]
|
2 years |
apdavison |
Partially fixed the pyNN.nest implementation of …
|
|
|
|
@900
|
[900]
|
2 years |
apdavison |
* Started implementing Recorder.reset()
* fixed a bug left over from the …
|
|
|
|
@899
|
[899]
|
2 years |
emuller |
Furthest I could get fixing the example network script
|
|
|
|
@898
|
[898]
|
2 years |
emuller |
A script to compare iaf_sfa_relref for nest and neuron
|
|
|
|
@897
|
[897]
|
2 years |
apdavison |
* In HH_cond_exp, conductances are now in µS, as for all other …
|
|
|
|
@896
|
[896]
|
2 years |
emuller |
Finally added iaf_cond_exp_gsfa_grr to NEURON backend. MCB seems ok ... …
|
|
|
|
@895
|
[895]
|
2 years |
apdavison |
Updated pyNN.nest to use multimeter, with the new restriction that a …
|
|
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|
@894
|
[894]
|
2 years |
apdavison |
Some fixes to recording from Assemblies. Changed Assembly.__getitem__() …
|
|
|
|
@893
|
[893]
|
2 years |
apdavison |
Creation of connections is now working in pyNN.moose
|
|
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|
@892
|
[892]
|
2 years |
apdavison |
System test framework updated to allow simulators to be excluded from …
|
|
|
|
@891
|
[891]
|
2 years |
apdavison |
More work on pyNN.moose
|
|
|
|
@890
|
[890]
|
2 years |
apdavison |
Not sure how the src/hoc directory reappeared: removing it again
|
|
|
|
@889
|
[889]
|
2 years |
apdavison |
Made a little progress on implementing pyNN.moose
|
|
|
|
@888
|
[888]
|
2 years |
apdavison |
Merged reorganization branch changes r872:887 to trunk
|
|
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|
@885
|
[885]
|
2 years |
pierre |
Assemblies are now working in Brian, at least for creation, get functions, …
|
|
|
|
@884
|
[884]
|
2 years |
pierre |
Assemly with heterogeneous synapse types (cond/curr) should raise errors …
|
|
|
|
@883
|
[883]
|
2 years |
pierre |
Fix the _print method for the Assemblies in case of gather=False. Add a …
|
|
|
|
@881
|
[881]
|
2 years |
pierre |
Fix a bug in the _print method of the Assembly object. Now, methods is …
|
|
|
|
@880
|
[880]
|
2 years |
pierre |
Forgot some tests
|
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|
@879
|
[879]
|
2 years |
pierre |
Work on the Assembly, to make the structure more robust and working. Now, …
|
|
|
|
@871
|
[871]
|
2 years |
apdavison |
Split out a base class BaseModelType? from StandardModelType?, to be used as …
|
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|
@870
|
[870]
|
2 years |
apdavison |
- Removed cellclass from everywhere except constructor argument lists: …
|
|
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@869
|
[869]
|
2 years |
pierre |
All tests are now passed with Brian, expect the one with plasticity …
|
|
|
|
@868
|
[868]
|
2 years |
apdavison |
Updated the source:src/changelog and developers' guide.
|
|
|
|
@867
|
[867]
|
2 years |
pierre |
Fix the bug with the reset function in Brian. One last bug, and everything …
|
|
|
|
@866
|
[866]
|
2 years |
pierre |
Add the possibility, in Brian, to have heterogeneous rates in a …
|
|
|
|
@865
|
[865]
|
2 years |
pierre |
Fix a bug in the NEST end() method, and therefore pass almost all the …
|
|
|
|
@864
|
[864]
|
2 years |
pierre |
Methods to save spikes/v/gsyn to a file, for an Assembly objects. All the …
|
|
|
|
@863
|
[863]
|
2 years |
pierre |
Methods to save spikes/v/gsyn to a file, for an Assembly objects. All the …
|
|
|
|
@862
|
[862]
|
2 years |
pierre |
Some more functions for the Assemblies objects, in order to make them …
|
|
|
|
@861
|
[861]
|
2 years |
pierre |
Simplification of the record functions. Remove the record_from arguments, …
|
|
|
|
@860
|
[860]
|
2 years |
emuller |
Adding example network usage of IF_cond_exp_gsfa_grr
|
|
|
|
@859
|
[859]
|
2 years |
apdavison |
More unit tests, and some minor changes in common.
|
|
|
|
@858
|
[858]
|
2 years |
apdavison |
More unit tests
|
|
|
|
@857
|
[857]
|
2 years |
apdavison |
Simplified BasePopulation.sample(arg). It need only handle the case …
|
|
|
|
@856
|
[856]
|
2 years |
pierre |
wrong commit for the sample method. Now, the method is working. Next step …
|
|
|
|
@855
|
[855]
|
2 years |
pierre |
Change the Assembly internal methods in order to save memory. Addition of …
|
|
|
|
@854
|
[854]
|
2 years |
apdavison |
Some improvements to the core.LazyArray class.
|
|
|
|
@853
|
[853]
|
2 years |
apdavison |
Added some new system and unit tests
|
|
|
|
@852
|
[852]
|
2 years |
pierre |
Projections to Assembly objects are now working in NEST and Neuron, not in …
|
|
|
|
@851
|
[851]
|
2 years |
apdavison |
Adding and cleaning up tests. Some tests from unsorted moved into …
|
|
|
|
@850
|
[850]
|
2 years |
apdavison |
Added new system test;
moved contents of test/unittests/tools.py to …
|
|
|
|
@849
|
[849]
|
2 years |
pierre |
Spring cleaning and minor optimizations. Addition of the EIF_cond_exp test
|
|
|
|
@848
|
[848]
|
2 years |
apdavison |
Minor spring-cleaning
|
|
|
|
@847
|
[847]
|
2 years |
apdavison |
Added some unit tests specific to the pyNN.neuron backend
|
|
|
|
@846
|
[846]
|
2 years |
pierre |
Add a patch to have a refractory period for the aeif models.
|
|
|
|
@845
|
[845]
|
2 years |
pierre |
Add the aeif cond exp/alpha in Brian, even if for the moment, the …
|
|
|
|
@844
|
[844]
|
2 years |
apdavison |
Added some more connector unit tests
|
|
|
|
@843
|
[843]
|
2 years |
pierre |
Wrong commit…
|
|
|
|
@842
|
[842]
|
2 years |
pierre |
Readapt and use an old unsorted test to compare results accross NEST, …
|
|
|
|
@841
|
[841]
|
2 years |
pierre |
Add a gather option to the get function of the Population objects. Correct …
|
|
|
|
@840
|
[840]
|
2 years |
pierre |
Bugs in the Brian module, due to the distintion between a compressed …
|
|
|
|
@839
|
[839]
|
2 years |
pierre |
STDP is now working with Brian, if a minor patch is applied to Brian. …
|
|
|
|
@838
|
[838]
|
2 years |
pierre |
Patch for the FromList? connector, to perform only connections between …
|
|
|
|
@837
|
[837]
|
2 years |
pierre |
Minor bugs, and addition of a custom savez function, in order to work in …
|
|
|
|
