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@506
|
[506]
|
11/19/08 16:08:43 |
apdavison |
Added a measure of the difference between Vm traces to the … |
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@505
|
[505]
|
11/19/08 11:54:19 |
apdavison |
Added proper command-line argument/option parsing to … |
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@504
|
[504]
|
11/18/08 17:46:22 |
apdavison |
Added test parameter files |
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@503
|
[503]
|
11/18/08 16:25:05 |
apdavison |
Replaced pylab plotting with NeuroTools.plotting.SimpleMultiplot, which … |
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@502
|
[502]
|
11/18/08 15:20:45 |
apdavison |
test/explore_space.py is now working. The test script saves results to a … |
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@501
|
[501]
|
11/18/08 11:21:42 |
apdavison |
Distribution of test jobs is now working - eliminated X-forwarding (using … |
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@500
|
[500]
|
11/17/08 17:45:45 |
apdavison |
Trying to get distributed testing working |
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@499
|
[499]
|
11/14/08 17:04:33 |
apdavison |
Updated tests to use new NeuroTools (0.1) |
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@498
|
[498]
|
11/14/08 14:49:59 |
pierre |
Still import errors, tests are still passed, of course, for nest2old.… |
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@495
|
[495]
|
11/13/08 11:38:29 |
pierre |
Split the NEST 2 packages into two packages: oldnest2 (old pynest API, … |
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@493
|
[493]
|
11/07/08 17:21:45 |
apdavison |
Added a new test script - some problems with PCSIM dropping spikes |
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@492
|
[492]
|
11/07/08 15:39:36 |
apdavison |
STDP testing improved. nest, pcsim and neuron now give pretty … |
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@491
|
[491]
|
11/06/08 23:29:25 |
apdavison |
Some tidying-up of the tests directory |
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@490
|
[490]
|
11/06/08 23:16:07 |
apdavison |
Moved the MultiSim class from test/multisim.py into the utility … |
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@489
|
[489]
|
11/06/08 22:53:15 |
apdavison |
Removed bfstdp model from test directory, as it doesn't really belong … |
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@488
|
[488]
|
11/06/08 17:41:37 |
apdavison |
In PCSIM, the STDP synapses have a parameter STDPgap, which needs to be … |
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@487
|
[487]
|
11/06/08 15:31:03 |
apdavison |
Small changes to the simple_STDP2.py script. |
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@485
|
[485]
|
11/06/08 14:07:27 |
apdavison |
More messing around with tests |
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@484
|
[484]
|
11/05/08 23:28:58 |
apdavison |
messing around with a more declarative way of specifying tests |
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@483
|
[483]
|
11/05/08 17:24:35 |
apdavison |
Made some progress in getting the same results with PCSIM as with NEST and … |
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@472
|
[472]
|
10/08/08 18:01:23 |
apdavison |
Replaced from pypcsim import * with import pypcsim. I probably haven't … |
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@471
|
[471]
|
10/08/08 17:09:20 |
apdavison |
Projection.saveConnections(), printWeights() and weightHistogram() … |
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@470
|
[470]
|
10/08/08 14:19:58 |
apdavison |
Partial implementation of Population.record_c() and print_c() for the … |
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@468
|
[468]
|
10/04/08 00:21:06 |
apdavison |
Wrote a bunch more unit tests for nest2 module.
Code coverage went from … |
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@467
|
[467]
|
10/02/08 16:58:17 |
apdavison |
pcsim Connectors now handle arrays of weights/delays (see ticket:116). |
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@466
|
[466]
|
10/02/08 13:25:24 |
apdavison |
Partial implementation of FromListConnector and FromFileConnector for … |
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@465
|
[465]
|
10/02/08 11:38:28 |
apdavison |
Various minor bug-fixes |
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@435
|
[435]
|
08/07/08 19:19:34 |
pierre |
Continue the work on the brian API. All the standard cells models are now … |
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@433
|
[433]
|
08/05/08 13:59:20 |
pierre |
Work on nest2.py, still to improve the building time of a large network. … |
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@421
|
[421]
|
07/17/08 09:34:30 |
pierre |
Modification of the RandomDistribution? object to allow the specification … |
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@415
|
[415]
|
07/16/08 10:35:16 |
pierre |
Add the possibility, in the common.py file, to select a particular model … |
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@410
|
[410]
|
07/14/08 16:08:37 |
apdavison |
The attempted optimisation of setting parameter values in r408 broke the … |
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@409
|
[409]
|
07/10/08 17:08:21 |
pierre |
Add a gather function to the nest2 api in the distributed mode. Now we can … |
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@403
|
[403]
|
06/26/08 17:17:12 |
apdavison |
More modifications to neuron2 to pass generictests.py |
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@396
|
[396]
|
06/26/08 13:39:39 |
apdavison |
The bugfix in r392 uncovered another problem: we should accept either … |
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@395
|
[395]
|
06/26/08 11:16:18 |
apdavison |
Removed dependence on NeuroTools/pygsl of some of the tests. |
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@393
|
[393]
|
06/26/08 11:12:09 |
apdavison |
Moved unit tests into their own subdirectory |
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@391
|
[391]
|
06/24/08 18:12:10 |
apdavison |
Work on updating regression tests. Fixed a bug in connect() function in … |
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@390
|
[390]
|
06/24/08 15:45:55 |
apdavison |
Tests now write output to a Results subdirectory of test, to avoid … |
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@388
|
[388]
|
06/24/08 13:33:05 |
apdavison |
Minor change in neuron2 to avoid problems with numpy versions < 1.1.0 |
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@387
|
[387]
|
06/23/08 17:32:59 |
apdavison |
In neuron2, implemented randomizeWeights(), randomizeDelays() and … |
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@384
|
[384]
|
06/21/08 09:29:19 |
pierre |
Enhancement of the rough getSubPopulation() method, that seems to be … |
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@379
|
[379]
|
06/20/08 16:47:59 |
apdavison |
Got some more Connectors working in neuron2. |
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@378
|
[378]
|
06/20/08 13:01:57 |
apdavison |
Removed a few debugging statements in neuron2. |
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@377
|
[377]
|
06/19/08 18:01:38 |
apdavison |
Major reorganisation of neuron2 to better encapsulate global simulator … |
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@376
|
[376]
|
06/19/08 15:54:15 |
apdavison |
More work on getting unit tests for neuron2 running |
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@375
|
[375]
|
06/18/08 17:30:31 |
apdavison |
Native cells defined as Python classes now work with the neuron2 … |
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@364
|
[364]
|
06/13/08 17:07:23 |
apdavison |
Implemented a Recorder class for the neuron module, although gathering … |
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|
@363
|
[363]
|
06/13/08 13:21:42 |
apdavison |
Encapsulated most of the recording/printing machinery in the nest2 … |
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|
@361
|
[361]
|
06/12/08 18:17:59 |
apdavison |
Implemented FixedNumberPreConnector and FixedNumberPostConnector for … |
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@341
|
[341]
|
06/05/08 16:25:49 |
apdavison |
Removed some references to oldneuron |
|
|
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@340
|
[340]
|
06/05/08 16:19:24 |
apdavison |
Slightly modified the procedure for detecting recording devices that need … |
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@335
|
[335]
|
06/05/08 12:46:13 |
apdavison |
In the neuron module, setDelays() and related methods of Projection … |
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|
|
@334
|
[334]
|
06/05/08 11:13:51 |
apdavison |
Forgot that tstop is not set by finitialize() |
|
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@332
|
[332]
|
06/05/08 10:22:58 |
apdavison |
Removed Projection.setThreshold() from API (see #76) |
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|
|
@317
|
[317]
|
05/09/08 16:01:03 |
pierre |
Modifications to the pyNN.brian module to have it working on the … |
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|
|
@308
|
[308]
|
04/24/08 18:00:10 |
apdavison |
* parallel_safe now works with Population.rset(), and when the cells … |
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|
@306
|
[306]
|
04/24/08 15:38:32 |
apdavison |
The NumpyRNG class now has some extra options for running parallel … |
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@303
|
[303]
|
04/18/08 14:54:00 |
apdavison |
Updated source:trunk/test/VAbenchmark_graphs.py to take account of changes … |
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@301
|
[301]
|
04/15/08 10:45:08 |
apdavison |
A couple of fixes the the neuron module for running in parallel |
|
|
|
@300
|
[300]
|
04/10/08 17:50:28 |
apdavison |
Fixed more bugs in running the neuron module on more than one node |
|
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@299
|
[299]
|
04/09/08 19:23:20 |
apdavison |
Fixed various bugs in running the neuron module on more than one node |
|
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@294
|
[294]
|
04/04/08 14:07:56 |
apdavison |
Reworked the handling of global variables such as the time step and … |
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@293
|
[293]
|
04/04/08 13:37:20 |
Pierre |
Start the describe() function for nest1/2.py, for a population and a … |
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@292
|
[292]
|
04/04/08 11:53:24 |
apdavison |
Added logging to source:trunk/test/runtests.py |
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@290
|
[290]
|
04/03/08 16:33:26 |
apdavison |
Implemented nest2.FromFileConnector and nest2.FromListConnector |
|
|
|
@287
|
[287]
|
04/03/08 15:30:51 |
apdavison |
Implemented neuron.FromFileConnector and neuron.FromListConnector |
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|
@286
|
[286]
|
04/03/08 15:00:59 |
apdavison |
Short-term plasticity now works for inhibitory synapses in neuron … |
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@285
|
[285]
|
04/01/08 17:25:22 |
apdavison |
Implemented short-term plasticity for excitatory synapses in neuron … |
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@281
|
[281]
|
04/01/08 12:44:27 |
apdavison |
Fixed a few bugs in pcsim module, so that unit tests all pass |
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@278
|
[278]
|
03/31/08 17:36:40 |
apdavison |
Fixed the incredibly careless bug I introduced recently, as reported in … |
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@277
|
[277]
|
03/31/08 16:43:30 |
apdavison |
Harmonisation of docstrings, plus a couple of improvements/updates to … |
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@275
|
[275]
|
03/28/08 17:21:28 |
apdavison |
White-space changes (always have a space after a comma) to conform more … |
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@273
|
[273]
|
03/28/08 16:37:48 |
apdavison |
Removed cellclass arg from set() function. All cells should now know … |
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@268
|
[268]
|
03/21/08 17:15:50 |
apdavison |
Reimplemented Population.set(), tset(), rset() in neuron, added … |
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|
@266
|
[266]
|
03/21/08 16:24:17 |
apdavison |
Fixed some bugs in Population.tset() and rset() in nest1. Added a … |
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|
|
@263
|
[263]
|
03/21/08 15:50:41 |
apdavison |
Fixed bug with Projection.randomizeWeights() in nest1 |
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|
|
@262
|
[262]
|
03/21/08 15:23:41 |
apdavison |
Reimplemented Population.set(), tset(), rset() in a more consistent … |
|
|
|
@259
|
[259]
|
03/21/08 09:39:42 |
apdavison |
Fixed bug #36 for nest2 and neuron (did not occur with nest1 and … |
|
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|
@258
|
[258]
|
03/20/08 19:13:08 |
apdavison |
The previous commit should have had all these changes as … |
|
|
|
@256
|
[256]
|
03/20/08 14:10:19 |
apdavison |
Improved error checking/error messages. A couple of bug fixes. Fixed #53. |
|
|
|
@255
|
[255]
|
03/20/08 13:06:53 |
apdavison |
Improvements to the __getattr__() and getParameters() methods of the … |
|
|
|
@254
|
[254]
|
03/20/08 10:46:35 |
apdavison |
Implemented Population.getSpikes() for nest1 and pcsim. Wrote a … |
|
|
|
@253
|
[253]
|
03/19/08 19:18:20 |
apdavison |
Assorted minor modifications and bug-fixes |
|
|
|
@251
|
[251]
|
03/19/08 19:00:29 |
apdavison |
Removed deprecated cell types
Added a ModelNotAvailable class to allow … |
|
|
|
@248
|
[248]
|
03/18/08 14:32:49 |
apdavison |
Added a dendritic_delay_fraction argument (float between 0 and 1) to the … |
|
|
|
@247
|
[247]
|
03/17/08 16:38:57 |
apdavison |
Fix for defect #48 ("In neuron, delays set using a Connector object … |
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|
|
@246
|
[246]
|
03/17/08 11:54:27 |
apdavison |
Fixed defect #47 (plus a small, related bug in the _get_recorded_data() … |
|
|
|
@244
|
[244]
|
03/14/08 17:33:28 |
apdavison |
Fixed #44. The call to pc.set_maxstep() had been commented out by … |
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|
|
@243
|
[243]
|
03/14/08 10:21:23 |
Pierre |
Minors modifications to deal with the Timer instance in the test files. … |
|
|
|
@234
|
[234]
|
02/19/08 15:56:43 |
apdavison |
New STDP API implemented in nest2. Not thoroughly tested yet, but this … |
|
|
|
@230
|
[230]
|
02/19/08 11:15:22 |
apdavison |
Changes in nest2:
* Added getWeights() and getDelays() methods. … |
|
|
|
@229
|
[229]
|
02/19/08 10:20:03 |
pierre |
Addition of the FromFile? and FromList? connector in the common file. … |
|
|
|
@227
|
[227]
|
02/15/08 16:51:10 |
apdavison |
A little reorganisation of the bfstdp code |
|
|
|
@225
|
[225]
|
02/15/08 14:22:16 |
apdavison |
Replaced NEURON-specific IntFire4nc cell with standard IF_curr_exp. … |
|
|
|
@221
|
[221]
|
02/15/08 14:08:04 |
apdavison |
Added some more tests |
|
|
|
@220
|
[220]
|
02/15/08 14:05:16 |
apdavison |
Fixed (I think) a bug in recording spikes with the neuron module (see … |
|
|
|
@219
|
[219]
|
02/14/08 13:52:26 |
apdavison |
bfstdp: Improved documentation, and tidied up the code a little. |
|
|
|
@218
|
[218]
|
02/13/08 18:34:12 |
apdavison |
bfstdp.py test model is now working … |
|
|
|
@216
|
[216]
|
02/13/08 13:56:26 |
apdavison |
Kept getting segmentation faults with the new 'pingable' VecStim NEURON … |
