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@486
|
[486]
|
11/06/08 15:29:59 |
apdavison |
neuron and pcsim modules used to overwrite the self.label … |
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@483
|
[483]
|
11/05/08 17:24:35 |
apdavison |
Made some progress in getting the same results with PCSIM as with NEST and … |
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|
@479
|
[479]
|
11/04/08 14:20:40 |
apdavison |
Fixed a couple of docstrings and a bug in the neuron module |
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|
@470
|
[470]
|
10/08/08 14:19:58 |
apdavison |
Partial implementation of Population.record_c() and print_c() for the … |
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@465
|
[465]
|
10/02/08 11:38:28 |
apdavison |
Various minor bug-fixes |
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@464
|
[464]
|
09/29/08 18:24:09 |
bruederle |
Changed tau_ref for hardware neuron model from 0.4ms to 1.0ms. Old … |
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@444
|
[444]
|
08/20/08 11:42:21 |
apdavison |
gather=True is working again for neuron.
When writing compatible … |
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@431
|
[431]
|
08/01/08 16:27:53 |
apdavison |
Fixed bug in neuron module: Population.tset() did not properly handle … |
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@416
|
[416]
|
07/16/08 10:40:43 |
apdavison |
Harmonization of logging setup across simulators (see #66). Also fixes bug … |
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@414
|
[414]
|
07/16/08 09:47:16 |
apdavison |
Harmonization of describe() methods across simulators, by moving its … |
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@391
|
[391]
|
06/24/08 18:12:10 |
apdavison |
Work on updating regression tests. Fixed a bug in connect() function in … |
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@388
|
[388]
|
06/24/08 13:33:05 |
apdavison |
Minor change in neuron2 to avoid problems with numpy versions < 1.1.0 |
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@374
|
[374]
|
06/18/08 15:39:28 |
apdavison |
Some harmonization of attribute names across simulators. |
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@372
|
[372]
|
06/18/08 14:47:45 |
apdavison |
recording.write_compatible_output() now takes an input_format … |
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@370
|
[370]
|
06/17/08 20:00:03 |
bruederle |
removed an obvious typo |
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@368
|
[368]
|
06/17/08 19:53:19 |
bruederle |
for the hardware neuron model, the set of manipulatable parameters has … |
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@367
|
[367]
|
06/17/08 17:44:22 |
apdavison |
More work on neuron2 |
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@366
|
[366]
|
06/16/08 17:32:56 |
apdavison |
Started reimplementing the neuron2 module from scratch |
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@365
|
[365]
|
06/13/08 18:17:09 |
apdavison |
Began updating the neuron module to use the new features of NEURON … |
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@364
|
[364]
|
06/13/08 17:07:23 |
apdavison |
Implemented a Recorder class for the neuron module, although gathering … |
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@361
|
[361]
|
06/12/08 18:17:59 |
apdavison |
Implemented FixedNumberPreConnector and FixedNumberPostConnector for … |
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@359
|
[359]
|
06/12/08 16:15:43 |
apdavison |
Merged changes from branches/0.4 r341:358 to trunk |
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@337
|
[337]
|
06/05/08 14:45:40 |
apdavison |
Assorted minor changes, notably adding a quit_on_end extra argument to … |
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@336
|
[336]
|
06/05/08 14:35:26 |
apdavison |
In neuron module, make sure that conductance-based synapses only ever … |
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@335
|
[335]
|
06/05/08 12:46:13 |
apdavison |
In the neuron module, setDelays() and related methods of Projection … |
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@334
|
[334]
|
06/05/08 11:13:51 |
apdavison |
Forgot that tstop is not set by finitialize() |
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@332
|
[332]
|
06/05/08 10:22:58 |
apdavison |
Removed Projection.setThreshold() from API (see #76) |
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@330
|
[330]
|
06/04/08 19:45:37 |
apdavison |
A couple more bug fixes |
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@329
|
[329]
|
06/04/08 19:43:25 |
apdavison |
The addition of a path argument to load_mechanisms() (see r328) was … |
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@328
|
[328]
|
06/04/08 19:37:28 |
apdavison |
load_mechanisms() now takes a path to search from as an optional … |
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@326
|
[326]
|
06/04/08 18:03:15 |
apdavison |
The neuron Connector classes were not handling the case of weights or … |
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@325
|
[325]
|
06/04/08 18:02:03 |
apdavison |
Fixed some minor bugs exposed by running doctests |
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|
@322
|
[322]
|
06/04/08 16:38:40 |
apdavison |
Assorted minor bug-fixes related to parallel simulations |
|
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|
@310
|
[310]
|
04/24/08 18:40:49 |
apdavison |
Added rank() to the API (returns the MPI rank). See #71. |
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@309
|
[309]
|
04/24/08 18:30:37 |
apdavison |
Removed setRNGseeds() from the API (see #68), since each simulator is so … |
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@308
|
[308]
|
04/24/08 18:00:10 |
apdavison |
* parallel_safe now works with Population.rset(), and when the cells … |
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@306
|
[306]
|
04/24/08 15:38:32 |
apdavison |
The NumpyRNG class now has some extra options for running parallel … |
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@302
|
[302]
|
04/18/08 14:52:28 |
apdavison |
* Added num_processes() function for all simulators.
* The headers of … |
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|
|
@301
|
[301]
|
04/15/08 10:45:08 |
apdavison |
A couple of fixes the the neuron module for running in parallel |
|
|
|
@300
|
[300]
|
04/10/08 17:50:28 |
apdavison |
Fixed more bugs in running the neuron module on more than one node |
|
|
|
@299
|
[299]
|
04/09/08 19:23:20 |
apdavison |
Fixed various bugs in running the neuron module on more than one node |
|
|
|
@295
|
[295]
|
04/04/08 14:13:39 |
apdavison |
Missed one min_delay in the last commit. |
|
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|
@294
|
[294]
|
04/04/08 14:07:56 |
apdavison |
Reworked the handling of global variables such as the time step and … |
|
|
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@290
|
[290]
|
04/03/08 16:33:26 |
apdavison |
Implemented nest2.FromFileConnector and nest2.FromListConnector |
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@288
|
[288]
|
04/03/08 16:22:24 |
Pierre |
First attempt to deal with the Dynamic Synapses parameters as random … |
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@287
|
[287]
|
04/03/08 15:30:51 |
apdavison |
Implemented neuron.FromFileConnector and neuron.FromListConnector |
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@286
|
[286]
|
04/03/08 15:00:59 |
apdavison |
Short-term plasticity now works for inhibitory synapses in neuron … |
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@285
|
[285]
|
04/01/08 17:25:22 |
apdavison |
Implemented short-term plasticity for excitatory synapses in neuron … |
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|
|
@284
|
[284]
|
04/01/08 15:40:21 |
apdavison |
Implemented short-term plasticity in nest2 module.
Corrected spelling: … |
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|
|
@283
|
[283]
|
04/01/08 14:36:50 |
apdavison |
Small refactoring of synaptic plasticity processing to prepare for … |
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|
|
@278
|
[278]
|
03/31/08 17:36:40 |
apdavison |
Fixed the incredibly careless bug I introduced recently, as reported in … |
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|
|
@277
|
[277]
|
03/31/08 16:43:30 |
apdavison |
Harmonisation of docstrings, plus a couple of improvements/updates to … |
|
|
|
@275
|
[275]
|
03/28/08 17:21:28 |
apdavison |
White-space changes (always have a space after a comma) to conform more … |
|
|
|
@274
|
[274]
|
03/28/08 17:08:20 |
apdavison |
Changed the implementation of the set() method in the neuron module. |
|
|
|
@273
|
[273]
|
03/28/08 16:37:48 |
apdavison |
Removed cellclass arg from set() function. All cells should now know … |
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|
@268
|
[268]
|
03/21/08 17:15:50 |
apdavison |
Reimplemented Population.set(), tset(), rset() in neuron, added … |
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|
|
@259
|
[259]
|
03/21/08 09:39:42 |
apdavison |
Fixed bug #36 for nest2 and neuron (did not occur with nest1 and … |
|
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|
@258
|
[258]
|
03/20/08 19:13:08 |
apdavison |
The previous commit should have had all these changes as … |
|
|
|
@255
|
[255]
|
03/20/08 13:06:53 |
apdavison |
Improvements to the __getattr__() and getParameters() methods of the … |
|
|
|
@251
|
[251]
|
03/19/08 19:00:29 |
apdavison |
Removed deprecated cell types
Added a ModelNotAvailable class to allow … |
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|
@248
|
[248]
|
03/18/08 14:32:49 |
apdavison |
Added a dendritic_delay_fraction argument (float between 0 and 1) to the … |
|
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|
@247
|
[247]
|
03/17/08 16:38:57 |
apdavison |
Fix for defect #48 ("In neuron, delays set using a Connector object … |
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|
|
@246
|
[246]
|
03/17/08 11:54:27 |
apdavison |
Fixed defect #47 (plus a small, related bug in the _get_recorded_data() … |
|
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|
@244
|
[244]
|
03/14/08 17:33:28 |
apdavison |
Fixed #44. The call to pc.set_maxstep() had been commented out by … |
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|
@242
|
[242]
|
03/13/08 10:36:10 |
apdavison |
In the neuron.__init__ module, filenames are now popped from the … |
|
|
|
@241
|
[241]
|
03/12/08 11:22:03 |
bruederle |
for the stage1 hardware, v_init is not a free parameter at all, thus it … |
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|
|
@237
|
[237]
|
02/25/08 18:10:02 |
apdavison |
Renamed methodParameters to method_parameters |
|
|
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@236
|
[236]
|
02/25/08 17:58:33 |
apdavison |
Renamed paramDict to param_dict |
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@235
|
[235]
|
02/25/08 17:26:31 |
apdavison |
Finally moved StandardCellType.translate1() to translate().
Added … |
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|
@234
|
[234]
|
02/19/08 15:56:43 |
apdavison |
New STDP API implemented in nest2. Not thoroughly tested yet, but this … |
|
|
|
@233
|
[233]
|
02/19/08 13:50:22 |
apdavison |
* Fixes to recording.py
* A few changes to make nest2 and neuron … |
|
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|
@223
|
[223]
|
02/15/08 14:19:00 |
apdavison |
Implemented reverse translation in neuron module. |
|
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|
@220
|
[220]
|
02/15/08 14:05:16 |
apdavison |
Fixed (I think) a bug in recording spikes with the neuron module (see … |
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|
@219
|
[219]
|
02/14/08 13:52:26 |
apdavison |
bfstdp: Improved documentation, and tidied up the code a little. |
|
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|
@216
|
[216]
|
02/13/08 13:56:26 |
apdavison |
Kept getting segmentation faults with the new 'pingable' VecStim NEURON … |
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@214
|
[214]
|
02/12/08 16:25:01 |
apdavison |
Implemented Populaton.getSpikes() for neuron |
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@212
|
[212]
|
02/12/08 14:25:17 |
apdavison |
Modification to the implementation of set() in the neuron module, so … |
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@211
|
[211]
|
02/12/08 09:35:19 |
apdavison |
test/bfstdp model now works with the neuron module. Next step is to … |
|
|
|
@209
|
[209]
|
02/07/08 17:41:00 |
apdavison |
bfstdp implementation seems to be working for neuron module plus some … |
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@208
|
[208]
|
02/07/08 16:07:14 |
apdavison |
Mostly converted the neuron module (and unit tests) to use the … |
|
|
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@201
|
[201]
|
02/04/08 16:38:11 |
apdavison |
Further development of the new STDP API implementation in neuron |
|
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@200
|
[200]
|
02/04/08 16:07:07 |
apdavison |
Missed a few translate() --> translate1() in r198. |
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@198
|
[198]
|
02/02/08 16:47:40 |
apdavison |
Switched all cells in nest, nest2, pcsim and neuron to the new … |
|
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|
@197
|
[197]
|
02/01/08 17:42:58 |
apdavison |
Making progress with neuron2 (still not working, though) |
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@191
|
[191]
|
01/29/08 11:36:00 |
apdavison |
Added Id and Rev keyword substitution to recently-created files. |
|
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@188
|
[188]
|
01/29/08 11:03:59 |
apdavison |
MAJOR CHANGES: merged multifile branch to trunk. The main changes:
(1) … |
|
copied from branches/multifile/src/neuron:
|
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@187
|
[187]
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01/29/08 10:36:19 |
apdavison |
Finished merging changes from trunk r183 to multifile branch. |
