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@445
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[445]
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08/20/08 11:50:41 |
apdavison |
I hadn't realized that the $Rev$ keyword only reflects the last revision … |
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@444
|
[444]
|
08/20/08 11:42:21 |
apdavison |
gather=True is working again for neuron.
When writing compatible … |
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@443
|
[443]
|
08/20/08 11:37:23 |
apdavison |
Added neuron2 and brian to list of modules |
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@442
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[442]
|
08/12/08 15:03:46 |
pierre |
Sorry, wrong files were commited, the lambda function are not correct.… |
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@441
|
[441]
|
08/12/08 14:37:01 |
pierre |
Minors optimization and cleanup in the … |
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@440
|
[440]
|
08/12/08 14:29:40 |
apdavison |
Fixed bug #109, although I'm not sure I've tested all the possible … |
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@439
|
[439]
|
08/12/08 14:18:42 |
pierre |
Optimization of the set() method in nest2, using a simple call to … |
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@438
|
[438]
|
08/12/08 13:42:00 |
apdavison |
Comment out printf statements in src/hoc/tmgsyn.mod (see ticket #112) |
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@437
|
[437]
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08/11/08 15:32:39 |
pierre |
Fix the bug with any for version of python above 2.5. just use the numpy … |
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@436
|
[436]
|
08/10/08 12:31:00 |
pierre |
Add the possibility of having delays for SpikeSourceArray? and … |
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@435
|
[435]
|
08/07/08 19:19:34 |
pierre |
Continue the work on the brian API. All the standard cells models are now … |
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@434
|
[434]
|
08/07/08 18:48:44 |
pierre |
Fix a bug in the new rset method, faster (only one call to … |
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@433
|
[433]
|
08/05/08 13:59:20 |
pierre |
Work on nest2.py, still to improve the building time of a large network. … |
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@432
|
[432]
|
08/04/08 19:01:06 |
pierre |
Error in the brian cells.py file, where I've left some units that may rise … |
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@431
|
[431]
|
08/01/08 16:27:53 |
apdavison |
Fixed bug in neuron module: Population.tset() did not properly handle … |
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@430
|
[430]
|
07/31/08 10:18:24 |
apdavison |
Can now save conductance recordings with nest2 using … |
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@429
|
[429]
|
07/29/08 09:54:23 |
apdavison |
Modifications to work with NEST 1.9.7550 |
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@428
|
[428]
|
07/27/08 18:25:09 |
pierre |
Typo bug… |
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@427
|
[427]
|
07/27/08 18:22:35 |
pierre |
Some work performed on the brian implementation of the pyNN API, after … |
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@426
|
[426]
|
07/22/08 16:28:09 |
apdavison |
Fixed a problem in nest2.Recorder.record() after using dynamic synapses. |
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@425
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[425]
|
07/20/08 20:31:25 |
apdavison |
Fixed typo in nest2.Recorder.write() (see ticket #107). Note: need to … |
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@424
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[424]
|
07/18/08 14:28:56 |
apdavison |
Now when you try to write data to a file, any existing file of the same … |
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@423
|
[423]
|
07/17/08 20:37:45 |
apdavison |
Started modifications to allow specifying an open file to write data to … |
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@421
|
[421]
|
07/17/08 09:34:30 |
pierre |
Modification of the RandomDistribution? object to allow the specification … |
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@416
|
[416]
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07/16/08 10:40:43 |
apdavison |
Harmonization of logging setup across simulators (see #66). Also fixes bug … |
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@415
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[415]
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07/16/08 10:35:16 |
pierre |
Add the possibility, in the common.py file, to select a particular model … |
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@414
|
[414]
|
07/16/08 09:47:16 |
apdavison |
Harmonization of describe() methods across simulators, by moving its … |
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@413
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[413]
|
07/15/08 14:31:49 |
apdavison |
First attempt to provide an interface for injecting arbitrary currents … |
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@412
|
[412]
|
07/15/08 12:52:03 |
apdavison |
Ticket #104 points out that if compatible_output is False and there is … |
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@411
|
[411]
|
07/14/08 16:26:23 |
apdavison |
Changed a few tabs to spaces. Please folks, check your editors insert four … |
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@410
|
[410]
|
07/14/08 16:08:37 |
apdavison |
The attempted optimisation of setting parameter values in r408 broke the … |
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@409
|
[409]
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07/10/08 17:08:21 |
pierre |
Add a gather function to the nest2 api in the distributed mode. Now we can … |
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@408
|
[408]
|
07/10/08 12:45:18 |
pierre |
Start to play with nest2.py in a distributed simulation framework. Add a … |
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@407
|
[407]
|
07/03/08 03:17:50 |
pierre |
Implement the Gutig rule and the van Rossum rule of plasticity in nest2, … |
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@406
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[406]
|
06/28/08 10:07:29 |
pierre |
Finished the cleanup of post/pre connectors and correct a bug therefore in … |
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@405
|
[405]
|
06/28/08 09:39:13 |
pierre |
Confusion in the FixNumberPre? and FixNumberPost? connectors in nest2 as … |
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@404
|
[404]
|
06/27/08 04:05:10 |
pierre |
Continue the enhancement of the distantdependentConnectors. Almost … |
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@403
|
[403]
|
06/26/08 17:17:12 |
apdavison |
More modifications to neuron2 to pass generictests.py |
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@402
|
[402]
|
06/26/08 16:29:47 |
bruederle |
In function Recorder.get() for recording to memory: 'spikes' replaced by … |
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@401
|
[401]
|
06/26/08 15:51:23 |
bruederle |
Removed an obvious cut'n'paste bug. |
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@400
|
[400]
|
06/26/08 15:50:42 |
bruederle |
Variable 'padding' was not initialized correctly |
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@399
|
[399]
|
06/26/08 14:52:10 |
pierre |
Update also the nest1 DistantDependantProbabilityConnector? to be coherent. … |
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@398
|
[398]
|
06/26/08 14:05:31 |
pierre |
I don't have commited the good files.... Sorry. |
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@397
|
[397]
|
06/26/08 13:49:29 |
pierre |
Great improvement of the distance dependant distance. Speed up … |
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@396
|
[396]
|
06/26/08 13:39:39 |
apdavison |
The bugfix in r392 uncovered another problem: we should accept either … |
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@395
|
[395]
|
06/26/08 11:16:18 |
apdavison |
Removed dependence on NeuroTools?/pygsl of some of the tests. |
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@394
|
[394]
|
06/26/08 11:15:39 |
apdavison |
Fixed a couple of bugs in neuron2: delays not getting set properly to … |
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@393
|
[393]
|
06/26/08 11:12:09 |
apdavison |
Moved unit tests into their own subdirectory |
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@392
|
[392]
|
06/26/08 10:36:28 |
pierre |
Fix a bug in the periodic boundaries conditions if those are specified by … |
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@391
|
[391]
|
06/24/08 18:12:10 |
apdavison |
Work on updating regression tests. Fixed a bug in connect() function in … |
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@390
|
[390]
|
06/24/08 15:45:55 |
apdavison |
Tests now write output to a Results subdirectory of test, to avoid … |
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@389
|
[389]
|
06/24/08 14:45:50 |
bkaplan |
nest2:end() tempdirs list stops growing |
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@388
|
[388]
|
06/24/08 13:33:05 |
apdavison |
Minor change in neuron2 to avoid problems with numpy versions < 1.1.0 |
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@387
|
[387]
|
06/23/08 17:32:59 |
apdavison |
In neuron2, implemented randomizeWeights(), randomizeDelays() and … |
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@386
|
[386]
|
06/23/08 14:41:33 |
bruederle |
Removed parameter e_rev_E from set of adjustable ones. |
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@385
|
[385]
|
06/22/08 16:34:33 |
pierre |
Sounds more nice to have a parent attribute for the subpopulation that … |
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@384
|
[384]
|
06/21/08 09:29:19 |
pierre |
Enhancement of the rough getSubPopulation() method, that seems to be … |
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@383
|
[383]
|
06/21/08 08:39:07 |
pierre |
Implement a rough getSubPopulation() function in the common.py file and … |
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@382
|
[382]
|
06/21/08 07:23:49 |
pierre |
Fix a minor bug in the describe() function of nest2 when called with more … |
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@381
|
[381]
|
06/21/08 05:59:46 |
pierre |
Fix the bug on plasticity, that was just a dictionnary problem. … |
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@380
|
[380]
|
06/21/08 05:15:22 |
pierre |
MAJOR typo bug in the describe function. How a single symbol car perturb a … |
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@379
|
[379]
|
06/20/08 16:47:59 |
apdavison |
Got some more Connectors working in neuron2. |
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@378
|
[378]
|
06/20/08 13:01:57 |
apdavison |
Removed a few debugging statements in neuron2. |
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@377
|
[377]
|
06/19/08 18:01:38 |
apdavison |
Major reorganisation of neuron2 to better encapsulate global simulator … |
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@376
|
[376]
|
06/19/08 15:54:15 |
apdavison |
More work on getting unit tests for neuron2 running |
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@375
|
[375]
|
06/18/08 17:30:31 |
apdavison |
Native cells defined as Python classes now work with the neuron2 … |
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@374
|
[374]
|
06/18/08 15:39:28 |
apdavison |
Some harmonization of attribute names across simulators. |
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@373
|
[373]
|
06/18/08 14:57:35 |
apdavison |
Fixed a couple of bugs introduced in recent commits.
Note, in nest2, … |
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@372
|
[372]
|
06/18/08 14:47:45 |
apdavison |
recording.write_compatible_output() now takes an input_format … |
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@371
|
[371]
|
06/18/08 14:02:10 |
apdavison |
Initia lization of membrane potentials now works in neuron2 |
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@370
|
[370]
|
06/17/08 20:00:03 |
bruederle |
removed an obvious typo |
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@369
|
[369]
|
06/17/08 19:57:26 |
bruederle |
for the hardware neuron model, the set of manipulatable parameters has … |
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@368
|
[368]
|
06/17/08 19:53:19 |
bruederle |
for the hardware neuron model, the set of manipulatable parameters has … |
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@367
|
[367]
|
06/17/08 17:44:22 |
apdavison |
More work on neuron2 |
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|
@366
|
[366]
|
06/16/08 17:32:56 |
apdavison |
Started reimplementing the neuron2 module from scratch |
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@365
|
[365]
|
06/13/08 18:17:09 |
apdavison |
Began updating the neuron module to use the new features of NEURON … |
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@364
|
[364]
|
06/13/08 17:07:23 |
apdavison |
Implemented a Recorder class for the neuron module, although gathering … |
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|
@363
|
[363]
|
06/13/08 13:21:42 |
apdavison |
Encapsulated most of the recording/printing machinery in the nest2 … |
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@361
|
[361]
|
06/12/08 18:17:59 |
apdavison |
Implemented FixedNumberPreConnector and FixedNumberPostConnector for … |
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@360
|
[360]
|
06/12/08 16:40:02 |
JensKremkow |
in recording added convert_compatible_output and in nest2.init … |
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@359
|
[359]
|
06/12/08 16:15:43 |
apdavison |
Merged changes from branches/0.4 r341:358 to trunk |
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@347
|
[347]
|
06/06/08 10:26:37 |
apdavison |
Merged changes from branches/0.4 r343-341 to trunk |
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@342
|
[342]
|
06/05/08 16:45:30 |
apdavison |
Finished removing the setRNGseeds() function, which was not completely … |
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@341
|
[341]
|
06/05/08 16:25:49 |
apdavison |
Removed some references to oldneuron |
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@340
|
[340]
|
06/05/08 16:19:24 |
apdavison |
Slightly modified the procedure for detecting recording devices that need … |
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@339
|
[339]
|
06/05/08 15:21:58 |
apdavison |
Fixed a small bug involving get_max_delay() in nest1 |
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@338
|
[338]
|
06/05/08 15:17:38 |
apdavison |
Fixed a small bug in FixedProbilityConnector in nest2 that was causing … |
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|
@337
|
[337]
|
06/05/08 14:45:40 |
apdavison |
Assorted minor changes, notably adding a quit_on_end extra argument to … |
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|
@336
|
[336]
|
06/05/08 14:35:26 |
apdavison |
In neuron module, make sure that conductance-based synapses only ever … |
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@335
|
[335]
|
06/05/08 12:46:13 |
apdavison |
In the neuron module, setDelays() and related methods of Projection … |
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@334
|
[334]
|
06/05/08 11:13:51 |
apdavison |
Forgot that tstop is not set by finitialize() |
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@333
|
[333]
|
06/05/08 10:43:57 |
apdavison |
Added a synapse_types attribute to all standard cell classes (see #90). |
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@332
|
[332]
|
06/05/08 10:22:58 |
apdavison |
Removed Projection.setThreshold() from API (see #76) |
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@331
|
[331]
|
06/05/08 10:14:17 |
apdavison |
Minor modifications to documentation |
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@330
|
[330]
|
06/04/08 19:45:37 |
apdavison |
A couple more bug fixes |
|
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@329
|
[329]
|
06/04/08 19:43:25 |
apdavison |
The addition of a path argument to load_mechanisms() (see r328) was … |
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@328
|
[328]
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06/04/08 19:37:28 |
apdavison |
load_mechanisms() now takes a path to search from as an optional … |
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@327
|
[327]
|
06/04/08 18:52:12 |
apdavison |
Added a partially optimized version of setWeights(), since the … |
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@326
|
[326]
|
06/04/08 18:03:15 |
apdavison |
The neuron Connector classes were not handling the case of weights or … |
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@325
|
[325]
|
06/04/08 18:02:03 |
apdavison |
Fixed some minor bugs exposed by running doctests |
