NeuroTools examples
Managing parameters with NeuroTools.parameters
1. ParameterSpace, scanning (Jens) Little demo plotting i.e. a certain function (exp,...) with different values. One can loop over the different values, create a plot of the curve etc. I have one like that.
2. ParameterSpace, indexing and plotting results. (Jens) Scan a parameter space and calculate something which is then put into a results array at the proper place. Then a figure of the results array.
Spike2 and AnalogSignal
3. IF-Curve. (Jens) Use example data to construct a IF-Curve. This will use AnalogSignal.threshold_detection and returns a SpikeTrain object.
4. Spike-Triggered-average (Jens) interaction of AnalogSignal with SpikeTrains
5. Parameter fitting of neurons. Calculate RC parameter of neurons recorded with Spike2.
SpikeList/Train
- The different measurements
- Cross-correlations between neurons
- ...
Plotting
tbd.
Putting it all together
9. Using Neurotools, PyNN and IPython for parallel exploration of parameter spaces This demo shows how to search the parameter space of a simple neuronal network using PyNN for simulation, IPython for parallel execution and Neurotools for everything else
