NeuroTools

NeuroTools is a set of tools written in python to manage, store and analyze your simulations. This is done by using standardized objects for data representation. It works along with PyNN but does not depend on it and is easy to install (see source:trunk/INSTALL ).

API documentation

(automatically generated from docstrings by source:trunk/doc/wikidoc.py - very likely to be out of date - check the source code for the latest changes)

• `spikes` module
• `analysis` module
• `benchmark` module
• `parameters` module
• `stgen` module
• `utilities` module
• `facets` module

Standard Data Schemes

• SpikeLists
• MembraneTraces?

Storing

• integrated in python using shelve
• HdfTools

Analyzing

• source:trunk/src/analysis.py
• source:trunk/src/plotting.py

Parameters

• The `parameters` module contains classes to make managing large, hierarchical parameter sets easier.
• See the ExampleScripts

The Neural Ensemble Ring

• http://neuralensemble.org/trac/PyNN
• http://neuralensemble.org/trac/nrnpy
• http://neuralensemble.org/trac/OpenElectrophy

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