FacetsML.rng

Revision 13, 8.6 kB (checked in by debeissat, 1 year ago)
updating link to transformation to PyNN

Line
1	<?xml version="1.0" encoding="UTF-8"?>
2	<?xml-stylesheet type="text/xsl" href="../transformations/FacetsMLtoPyNN.xsl"?>
3	<rng:grammar ns="http://neuralensemble.org/FacetsML"
4	xmlns="http://neuralensemble.org/FacetsML"
5	xmlns:rng="http://relaxng.org/ns/structure/1.0"
6	xmlns:a="http://relaxng.org/ns/compatibility/annotations/1.0"
7	xmlns:class="http://neuralensemble.org/FacetsML/cellclass"
8	xmlns:rand="http://neuralensemble.org/FacetsML/randomNumberGenerator"
9	datatypeLibrary="http://www.w3.org/2001/XMLSchema-datatypes">
10
11	<rng:include ns="http://neuralensemble.org/FacetsML/cellclass" href="cellclass.rng"/>
12	<rng:include ns="http://neuralensemble.org/FacetsML/randomNumberGenerator" href="random.rng"/>
13
14	<rng:start>
15	<rng:ref name="network"/>
16	</rng:start>
17
18	<rng:define name="network">
19	<rng:element name="network">
20	<rng:attribute name="timestep">
21	<rng:data type="float"/>
22	</rng:attribute>
23	<rng:attribute name="min_delay">
24	<rng:data type="float"/>
25	</rng:attribute>
26	<rng:attribute name="max_delay">
27	<rng:data type="float"/>
28	</rng:attribute>
29	<a:documentation>(ms) simulaton duration</a:documentation>
30	<rng:attribute name="sim_duration">
31	<rng:data type="float"/>
32	</rng:attribute>
33
34	<rng:interleave>
35	<rng:ref name="extras"/>
36	<rng:ref name="rng"/>
37	<rng:ref name="cells"/>
38	<rng:ref name="populations"/>
39	<rng:ref name="projections"/>
40	</rng:interleave>
41	</rng:element>
42	</rng:define>
43
44	<rng:define name="extras">
45	<rng:oneOrMore>
46	<rng:ref name="extra"/>
47	</rng:oneOrMore>
48	</rng:define>
49
50	<rng:define name="extra">
51	<rng:element name="extra">
52	<rng:attribute name="name">
53	<rng:data type="string"/>
54	</rng:attribute>
55	<rng:attribute name="value">
56	<rng:data type="string"/>
57	</rng:attribute>
58	</rng:element>
59	</rng:define>
60
61	<rng:define name="rng">
62	<rng:element name="rng">
63	<rng:attribute name="name">
64	<rng:data type="string"/>
65	</rng:attribute>
66	<rng:attribute name="seed">
67	<rng:data type="integer"/>
68	</rng:attribute>
69	<rng:attribute name="generator">
70	<rng:choice>
71	<rng:value>NumpyRNG</rng:value>
72	<rng:value>GSLRNG</rng:value>
73	</rng:choice>
74	</rng:attribute>
75	</rng:element>
76	</rng:define>
77
78	<rng:define name="cells">
79	<rng:element name="cells">
80	<rng:oneOrMore>
81	<rng:ref name="cell"/>
82	</rng:oneOrMore>
83	</rng:element>
84	</rng:define>
85
86	<rng:define name="cell">
87	<rng:element name="cell">
88	<rng:attribute name="name">
89	<rng:data type="string"/>
90	</rng:attribute>
91	<rng:ref name="cellclass"/>
92	</rng:element>
93	</rng:define>
94
95	<rng:define name="populations">
96	<rng:element name="populations">
97	<rng:oneOrMore>
98	<rng:ref name="population"/>
99	</rng:oneOrMore>
100	</rng:element>
101	</rng:define>
102
103
104	<rng:define name="population">
105	<rng:element name="population">
106	<rng:attribute name="name">
107	<rng:data type="string"/>
108	</rng:attribute>
109	<rng:optional>
110	<rng:attribute name="label">
111	<rng:data type="string"/>
112	</rng:attribute>
113	</rng:optional>
114	<rng:oneOrMore>
115	<rng:element name="dim">
116	<rng:attribute name="size">
117	<rng:data type="integer"/>
118	</rng:attribute>
119	</rng:element>
120	</rng:oneOrMore>
121	<rng:element name="cell_type">
122	<rng:attribute name="name">
123	<rng:data type="string"/>
124	</rng:attribute>
125	</rng:element>
126	<rng:optional>
127	<rng:element name="randomInit">
128	<rng:attribute name="rng">
129	<rng:data type="string"/>
130	</rng:attribute>
131	<rng:ref name="random"/>
132	</rng:element>
133	</rng:optional>
134	</rng:element>
135	</rng:define>
136
137
138
139	<rng:define name="projections">
140	<rng:element name="projections">
141	<rng:zeroOrMore>
142	<rng:ref name="projection"/>
143	</rng:zeroOrMore>
144	</rng:element>
145	</rng:define>
146
147	<rng:define name="projection">
148	<rng:element name="projection">
149	<a:documentation>
150	presynaptic_population and postsynaptic_population - Population objects.
151	<br/>
152	source - string specifying which attribute of the presynaptic cell signals action potentials
153	<br/>
154	target - string specifying which synapse on the postsynaptic cell to connect to
155	If source and/or target are not given, default values are used.
156	<br/>
157	method - string indicating which algorithm to use in determining connections.
158	Allowed methods are 'allToAll', 'oneToOne', 'fixedProbability',
159	'distanceDependentProbability', 'fixedNumberPre', 'fixedNumberPost',
160	'fromFile', 'fromList'
161	<br/>
162	methodParameters - dict containing parameters needed by the connection method,
163	although we should allow this to be a number or string if there is only
164	one parameter.
165	<br/>
166	WARNING : in the test, the value given is not a dict, but the directy value of the parameter
167	<br/>
168	rng - since most of the connection methods need uniform random numbers,
169	it is probably more convenient to specify a RNG object here rather
170	than within methodParameters, particularly since some methods also use
171	random numbers to give variability in the number of connections per cell.
172	</a:documentation>
173	<rng:attribute name="name">
174	<rng:data type="string"/>
175	</rng:attribute>
176	<rng:attribute name="presynaptic_population_name">
177	<rng:data type="string"/>
178	</rng:attribute>
179	<rng:attribute name="postsynaptic_population_name">
180	<rng:data type="string"/>
181	</rng:attribute>
182	<rng:attribute name="method">
183	<rng:choice>
184	<rng:value>allToAll</rng:value>
185	<rng:value>oneToOne</rng:value>
186	<rng:value>fixedProbability</rng:value>
187	<rng:value>distanceDependentProbability</rng:value>
188	<rng:value>fixedNumberPre</rng:value>
189	<rng:value>fixedNumberPost</rng:value>
190	<rng:value>fromFile</rng:value>
191	</rng:choice>
192	</rng:attribute>
193	<rng:zeroOrMore>
194	<rng:element name="methodParameter">
195	<rng:attribute name="name">
196	<rng:data type="string"/>
197	</rng:attribute>
198	<rng:attribute name="value">
199	<rng:data type="string"/>
200	</rng:attribute>
201	</rng:element>
202	</rng:zeroOrMore>
203	<rng:optional>
204	<rng:attribute name="weight">
205	<rng:data type="float"/>
206	</rng:attribute>
207	</rng:optional>
208	<rng:optional>
209	<rng:attribute name="source">
210	<rng:data type="string"/>
211	</rng:attribute>
212	</rng:optional>
213	<rng:optional>
214	<rng:attribute name="target">
215	<rng:data type="string"/>
216	</rng:attribute>
217	</rng:optional>
218	<rng:optional>
219	<rng:attribute name="label">
220	<rng:data type="string"/>
221	</rng:attribute>
222	</rng:optional>
223	<rng:optional>
224	<rng:attribute name="rng">
225	<rng:data type="string"/>
226	</rng:attribute>
227	</rng:optional>
228	</rng:element>
229	</rng:define>
230
231	</rng:grammar>

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