form: FacetsML.html

File FacetsML.html, 166.0 kB (added by debeissat, 1 year ago)

Line
1	<html xmlns:rng="http://relaxng.org/ns/structure/1.0" xmlns:a="http://relaxng.org/ns/compatibility/annotations/1.0">
2	<head>
3	<meta http-equiv="Content-Type" content="text/html; charset=utf-8">
4	<script type="text/javascript">
5	function showOptionContent(selectElement) {
6	var optionSelectedName = selectElement.options[selectElement.selectedIndex].text;
7	var divTag = nextSiblingElement(selectElement);
8	while (divTag.tagName == 'DIV') {
9	if (divTag.getAttribute('name') == optionSelectedName) {
10	divTag.style.display = "";
11	//In order not to send their values
12	var inputTags = divTag.getElementsByTagName('INPUT');
13	for (var i=inputTags.length -1 ; i>-1 ; i--) {
14	inputTags[i].style.display = "";
15	}
16	} else {
17	divTag.style.display = "none";
18	//In order not to send their values
19	var inputTags = divTag.getElementsByTagName('INPUT');
20	for (var i=inputTags.length -1 ; i>-1 ; i--) {
21	inputTags[i].style.display = "none";
22	}
23	}
24	divTag = nextSiblingElement(divTag);
25	}
26	}
27
28	function nextSiblingElement(node) {
29	var node = node.nextSibling;
30	//skip the text nodes
31	while (node.nodeType != 1) {
32	node = node.nextSibling;
33	}
34	return node;
35	}
36
37	function removeOne(removeButton) {
38	//The element to remove is the next brother element of the addButton
39	var elementToRemove = removeButton.nextSibling;
40	elementToRemove.parentNode.removeChild(elementToRemove);
41	//must remove 1 to the nbelmtsadded attribute of the addButton element
42	var addButton = removeButton.previousSibling;
43	//store the last index in the nbelmtsadded attribute of the addButton
44	nbElementsAdded = parseInt(addButton.getAttribute("nbelmtsadded")) - 1;
45	addButton.setAttribute("nbelmtsadded",nbElementsAdded);
46	}
47
48
49	function addOne(addButton) {
50	//The source is the next brother element of the addButton
51	var source = addButton.nextSibling.nextSibling;
52	var sourceCloned = source.cloneNode(true);
53	var nbElementsAdded = parseInt(addButton.getAttribute("nbelmtsadded")) + 1;
54	//all the index of the input tags under the source must be incremented
55	var inputTags = sourceCloned.getElementsByTagName('INPUT');
56	for (var i=inputTags.length - 1 ; i>-1 ; i--) {
57	//example of the button name : /retina/ganglion-cells/output-type/circular-spiking-array/units
58	//the element to change is the first [X] after this string which is addButton.name
59	var inputTagName = inputTags[i].getAttribute("name");
60	//get the index of the first "[" after the string
61	var indexOfNumber = inputTagName.indexOf("[",addButton.name.length);
62	if (indexOfNumber != -1) {
63	//add 1 to the index of the last created element in order to create the XPath of the
64	//newly created element
65	var sourceClonedName = inputTagName.substr(0,indexOfNumber+1) + nbElementsAdded + inputTagName.substr(indexOfNumber+2,inputTagName.length);
66	inputTags[i].setAttribute("name",sourceClonedName);
67	}
68	}
69	//store the last index in the nbelmtsadded attribute of the addButton
70	addButton.setAttribute("nbelmtsadded",nbElementsAdded);
71	source.parentNode.insertBefore(sourceCloned,source);
72	}
73
74	</script></head>
75	<body>
76	<div id="form">
77	<form>
78	<namespace prefix="xml" uri="http://www.w3.org/XML/1998/namespace"></namespace>
79	<namespace prefix="" uri="http://neuralensemble.org/FacetsML"></namespace>
80	<namespace prefix="rng" uri="http://relaxng.org/ns/structure/1.0"></namespace>
81	<namespace prefix="a" uri="http://relaxng.org/ns/compatibility/annotations/1.0"></namespace>
82	<namespace prefix="class" uri="http://neuralensemble.org/FacetsML/cellclass"></namespace>
83	<namespace prefix="rand" uri="http://neuralensemble.org/FacetsML/randomNumberGenerator"></namespace>
84	<div>
85	<p style="margin: 1px" name="/network" class="element">network</p>
86	<p style="margin: 1px"><span class="indent">      </span><label for="/network/@timestep" class="attribute">timestep :
87	</label><input type="text" name="/network/@timestep" class="data"></p>
88	<p style="margin: 1px"><span class="indent">      </span><label for="/network/@min_delay" class="attribute">min_delay :
89	</label><input type="text" name="/network/@min_delay" class="data"></p>
90	<p style="margin: 1px"><span class="indent">      </span><label for="/network/@max_delay" class="attribute">max_delay :
91	</label><input type="text" name="/network/@max_delay" class="data"></p><i class="documentation">
92	<a:documentation xmlns="http://neuralensemble.org/FacetsML" xmlns:class="http://neuralensemble.org/FacetsML/cellclass" xmlns:rand="http://neuralensemble.org/FacetsML/randomNumberGenerator">(ms) simulaton duration</a:documentation></i><p style="margin: 1px"><span class="indent">      </span><label for="/network/@sim_duration" class="attribute">sim_duration :
93	</label><input type="text" name="/network/@sim_duration" class="data"></p><span class="indent">      </span><input type="button" value="+ " onclick="addOne(this)" name="/network" nbelmtsadded="1" class="addButton"><input type="button" value="-" onclick="removeOne(this)" name="/network" class="rmvButton"><div class="multiple" style="border: dashed; border-width: 1px">
94	<div>
95	<p style="margin: 1px" name="/network/extra[1]" class="element"><span class="indent">      </span>extra
96	</p>
97	<p style="margin: 1px"><span class="indent">      </span><span class="indent">      </span><label for="/network/extra[1]/@name" class="attribute">name :
98	</label><input type="text" name="/network/extra[1]/@name" class="data"></p>
99	<p style="margin: 1px"><span class="indent">      </span><span class="indent">      </span><label for="/network/extra[1]/@value" class="attribute">value :
100	</label><input type="text" name="/network/extra[1]/@value" class="data"></p>
101	</div>
102	</div>
103	<div>
104	<p style="margin: 1px" name="/network/rng" class="element"><span class="indent">      </span>rng
105	</p>
106	<p style="margin: 1px"><span class="indent">      </span><span class="indent">      </span><label for="/network/rng/@name" class="attribute">name :
107	</label><input type="text" name="/network/rng/@name" class="data"></p>
108	<p style="margin: 1px"><span class="indent">      </span><span class="indent">      </span><label for="/network/rng/@seed" class="attribute">seed :
109	</label><input type="text" name="/network/rng/@seed" class="data"></p>
110	<p style="margin: 1px"><span class="indent">      </span><span class="indent">      </span><label for="/network/rng/@generator" class="attribute">generator :
111	</label><select style="height: 20px" name="/network/rng/@generator" sendselect="yes" class="choice">
112	<option value="NumpyRNG" name="/network/rng/@generator/NumpyRNG" class="choice_option">NumpyRNG</option>
113	<option value="GSLRNG" name="/network/rng/@generator/GSLRNG" class="choice_option">GSLRNG</option></select></p>
114	</div>
115	<div>
116	<p style="margin: 1px" name="/network/cells" class="element"><span class="indent">      </span>cells
117	</p><span class="indent">      </span><span class="indent">      </span><input type="button" value="+ " onclick="addOne(this)" name="/network/cells" nbelmtsadded="1" class="addButton"><input type="button" value="-" onclick="removeOne(this)" name="/network/cells" class="rmvButton"><div class="multiple" style="border: dashed; border-width: 1px">
118	<div>
119	<p style="margin: 1px" name="/network/cells/cell[1]" class="element"><span class="indent">      </span><span class="indent">      </span>cell
120	</p>
121	<p style="margin: 1px"><span class="indent">      </span><span class="indent">      </span><span class="indent">      </span><label for="/network/cells/cell[1]/@name" class="attribute">name :
122	</label><input type="text" name="/network/cells/cell[1]/@name" class="data"></p><i class="documentation">
123	<a:documentation><style>
124	table {
125	border: 1px outset;
126	}
127	td {
128	border: 1px inset;
129	}
130	</style></a:documentation></i><span class="indent">      </span><span class="indent">      </span><span class="indent">      </span><select style="height: 20px" onchange="showOptionContent(this)" name="/network/cells/cell[1]" class="choice">
131	<option value="IF_curr_alpha" name="/network/cells/cell[1]/IF_curr_alpha" class="choice_option">IF_curr_alpha</option>
132	<option value="IF_curr_exp" name="/network/cells/cell[1]/IF_curr_exp" class="choice_option">IF_curr_exp</option>
133	<option value="IF_cond_alpha" name="/network/cells/cell[1]/IF_cond_alpha" class="choice_option">IF_cond_alpha</option>
134	<option value="IF_cond_exp" name="/network/cells/cell[1]/IF_cond_exp" class="choice_option">IF_cond_exp</option>
135	<option value="IF_cond_exp_sfa_rr" name="/network/cells/cell[1]/IF_cond_exp_sfa_rr" class="choice_option">IF_cond_exp_sfa_rr</option>
136	<option value="AdaptiveExponentialIF_alpha" name="/network/cells/cell[1]/AdaptiveExponentialIF_alpha" class="choice_option">AdaptiveExponentialIF_alpha</option>
137	<option value="SpikeSourcePoisson" name="/network/cells/cell[1]/SpikeSourcePoisson" class="choice_option">SpikeSourcePoisson</option>
138	<option value="SpikeSourceArray" name="/network/cells/cell[1]/SpikeSourceArray" class="choice_option">SpikeSourceArray</option>
139	<option value="NonStandardCellType" name="/network/cells/cell[1]/NonStandardCellType" class="choice_option">NonStandardCellType</option></select><div name="IF_curr_alpha" style="display: none" class="choice_content">
140	<div>
141	<p style="margin: 1px" name="/network/cells/cell[1]/class:IF_curr_alpha" class="element"><span class="indent">      </span><span class="indent">      </span><span class="indent">      </span>class:IF_curr_alpha
142	</p><i class="documentation">
143	<a:documentation>
144	default_parameters = {
145	<table>
146	<tr>
147	<td>
148	'v_rest'
149	</td>
150	<td> -65.0</td>
151	<td>Resting membrane potential in mV.</td>
152	</tr>
153	<tr>
154	<td>
155	'cm'
156	</td>
157	<td> 1.0, </td>
158	<td>Capacity of the membrane in nF </td>
159	</tr>
160	<tr>
161	<td>
162	'tau_m'
163	</td>
164	<td> 20.0, </td>
165	<td>Membrane time constant in ms. </td>
166	</tr>
167	<tr>
168	<td>
169	'tau_refrac'
170	</td>
171	<td> 0.0, </td>
172	<td>Duration of refractory period in ms. </td>
173	</tr>
174	<tr>
175	<td>
176	'tau_syn'
177	</td>
178	<td> 5.0, </td>
179	<td>Rise time of the synaptic alpha function in ms.</td>
180	</tr>
181	<tr>
182	<td>
183	'i_offset'
184	</td>
185	<td> 0.0, </td>
186	<td>Offset current in nA </td>
187	</tr>
188	<tr>
189	<td>
190	'v_reset'
191	</td>
192	<td> -65.0, </td>
193	<td>Reset potential after a spike in mV. </td>
194	</tr>
195	<tr>
196	<td>
197	'v_thresh'
198	</td>
199	<td> -50.0, </td>
200	<td>Spike threshold in mV. </td>
201	</tr>
202	<tr>
203	<td>
204	'v_init'
205	</td>
206	<td> -65.0, </td>
207	<td>Membrane potential in mV at t = 0 </td>
208	</tr>
209	</table>
210	}<br></a:documentation></i><i class="optional" style="color: #4963FF">
211	<p style="margin: 1px"><span class="indent">      </span><span class="indent">      </span><span class="indent">      </span><span class="indent">      </span><label for="/network/cells/cell[1]/class:IF_curr_alpha/@v_rest" class="attribute">v_rest :
212	</label><input type="text" name="/network/cells/cell[1]/class:IF_curr_alpha/@v_rest" class="data"><i class="optional" style="color: #4963FF"><select style="height: 20px" name="/network/cells/cell[1]/class:IF_curr_alpha/@v_rest" sendselect="yes" class="choice">
213	<option value="ms" name="/network/cells/cell[1]/class:IF_curr_alpha/@v_rest/ms" class="choice_option">ms</option>
214	<option value="s" name="/network/cells/cell[1]/class:IF_curr_alpha/@v_rest/s" class="choice_option">s</option></select></i></p></i><i class="optional" style="color: #4963FF">
215	<p style="margin: 1px"><span class="indent">      </span><span class="indent">      </span><span class="indent">      </span><span class="indent">      </span><label for="/network/cells/cell[1]/class:IF_curr_alpha/@cm" class="attribute">cm :
216	</label><input type="text" name="/network/cells/cell[1]/class:IF_curr_alpha/@cm" class="data"><i class="optional" style="color: #4963FF"><select style="height: 20px" name="/network/cells/cell[1]/class:IF_curr_alpha/@cm" sendselect="yes" class="choice">
217	<option value="nF" name="/network/cells/cell[1]/class:IF_curr_alpha/@cm/nF" class="choice_option">nF</option>
218	<option value="mF" name="/network/cells/cell[1]/class:IF_curr_alpha/@cm/mF" class="choice_option">mF</option>
219	<option value="F" name="/network/cells/cell[1]/class:IF_curr_alpha/@cm/F" class="choice_option">F</option></select></i></p></i><i class="optional" style="color: #4963FF">
220	<p style="margin: 1px"><span class="indent">      </span><span class="indent">      </span><span class="indent">      </span><span class="indent">      </span><label for="/network/cells/cell[1]/class:IF_curr_alpha/@tau_m" class="attribute">tau_m :
221	</label><input type="text" name="/network/cells/cell[1]/class:IF_curr_alpha/@tau_m" class="data"><i class="optional" style="color: #4963FF"><select style="height: 20px" name="/network/cells/cell[1]/class:IF_curr_alpha/@tau_m" sendselect="yes" class="choice">
222	<option value="ms" name="/network/cells/cell[1]/class:IF_curr_alpha/@tau_m/ms" class="choice_option">ms</option>
223	<option value="s" name="/network/cells/cell[1]/class:IF_curr_alpha/@tau_m/s" class="choice_option">s</option></select></i></p></i><i class="optional" style="color: #4963FF">
224	<p style="margin: 1px"><span class="indent">      </span><span class="indent">      </span><span class="indent">      </span><span class="indent">      </span><label for="/network/cells/cell[1]/class:IF_curr_alpha/@tau_refrac" class="attribute">tau_refrac :
225	</label><input type="text" name="/network/cells/cell[1]/class:IF_curr_alpha/@tau_refrac" class="data"><i class="optional" style="color: #4963FF"><select style="height: 20px" name="/network/cells/cell[1]/class:IF_curr_alpha/@tau_refrac" sendselect="yes" class="choice">
226	<option value="ms" name="/network/cells/cell[1]/class:IF_curr_alpha/@tau_refrac/ms" class="choice_option">ms</option>
227	<option value="s" name="/network/cells/cell[1]/class:IF_curr_alpha/@tau_refrac/s" class="choice_option">s</option></select></i></p></i><i class="optional" style="color: #4963FF">
228	<p style="margin: 1px"><span class="indent">      </span><span class="indent">      </span><span class="indent">      </span><span class="indent">      </span><label for="/network/cells/cell[1]/class:IF_curr_alpha/@tau_syn" class="attribute">tau_syn :
229	</label><input type="text" name="/network/cells/cell[1]/class:IF_curr_alpha/@tau_syn" class="data"><i class="optional" style="color: #4963FF"><select style="height: 20px" name="/network/cells/cell[1]/class:IF_curr_alpha/@tau_syn" sendselect="yes" class="choice">
230	<option value="ms" name="/network/cells/cell[1]/class:IF_curr_alpha/@tau_syn/ms" class="choice_option">ms</option>
231	<option value="s" name="/network/cells/cell[1]/class:IF_curr_alpha/@tau_syn/s" class="choice_option">s</option></select></i></p></i><i class="optional" style="color: #4963FF">
232	<p style="margin: 1px"><span class="indent">      </span><span class="indent">      </span><span class="indent">      </span><span class="indent">      </span><label for="/network/cells/cell[1]/class:IF_curr_alpha/@i_offset" class="attribute">i_offset :
233	</label><input type="text" name="/network/cells/cell[1]/class:IF_curr_alpha/@i_offset" class="data"><i class="optional" style="color: #4963FF"><select style="height: 20px" name="/network/cells/cell[1]/class:IF_curr_alpha/@i_offset" sendselect="yes" class="choice">
234	<option value="nA" name="/network/cells/cell[1]/class:IF_curr_alpha/@i_offset/nA" class="choice_option">nA</option>
235	<option value="mA" name="/network/cells/cell[1]/class:IF_curr_alpha/@i_offset/mA" class="choice_option">mA</option>
236	<option value="A" name="/network/cells/cell[1]/class:IF_curr_alpha/@i_offset/A" class="choice_option">A</option></select></i></p></i><i class="optional" style="color: #4963FF">
237	<p style="margin: 1px"><span class="indent">      </span><span class="indent">      </span><span class="indent">      </span><span class="indent">      </span><label for="/network/cells/cell[1]/class:IF_curr_alpha/@v_reset" class="attribute">v_reset :
238	</label><input type="text" name="/network/cells/cell[1]/class:IF_curr_alpha/@v_reset" class="data"><i class="optional" style="color: #4963FF"><select style="height: 20px" name="/network/cells/cell[1]/class:IF_curr_alpha/@v_reset" sendselect="yes" class="choice">
239	<option value=